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1

Multiple gene genealogies and AFLPs suggest cryptic speciation and long-distance dispersal in the basidiomycete Serpula himantioides (Boletales)

HÅVARD KAUSERUD, ØYVIND STENSRUD, CONY DECOCK, KAMRAN SHALCHIAN-TABRIZI, TROND SCHUMACHER

Journal:

Molecular Ecology

Year:

2006

Language:

english

File:

PDF, 248 KB

english, 2006

2

Scanning Electron Microscopy and Gramicidin Patch Clamp Recordings of Microvillous Receptor Neurons Dissociated from the Rat Vomeronasal Organ

Trotier, D., Doving, K. B., Ore, K., Shalchian-Tabrizi, C.

Journal:

Chemical Senses

Year:

1998

Language:

english

File:

PDF, 3.50 MB

english, 1998

3

Extensive dinoflagellate phylogenies indicate infrequent marine–freshwater transitions

Ramiro Logares, Kamran Shalchian-Tabrizi, Andrés Boltovskoy, Karin Rengefors

Journal:

Molecular Phylogenetics and Evolution

Year:

2007

Language:

english

File:

PDF, 2.09 MB

english, 2007

4

GENETIC VARIABILITY AND MOLECULAR PHYLOGENY OF DINOPHYSIS SPECIES (DINOPHYCEAE) FROM NORWEGIAN WATERS INFERRED FROM SINGLE CELL ANALYSES OF rDNA

Bente Edvardsen, Kamran Shalchian-Tabrizi, Kjetill S. Jakobsen, Linda K. Medlin, Einar Dahl, Sissel Brubak, Eystein Paasche

Journal:

Journal of Phycology

Year:

2003

Language:

english

File:

PDF, 808 KB

english, 2003

5

CLOTU: An online pipeline for processing and clustering of 454 amplicon reads into OTUs followed by taxonomic annotation

Surendra Kumar, Tor Carlsen, Bjørn-Helge Mevik, Pål Enger, Rakel Blaalid, Kamran Shalchian-Tabrizi, Håvard Kauserud

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 382 KB

english, 2011

6

Phenotypically Different Microalgal Morphospecies with Identical Ribosomal DNA: A Case of Rapid Adaptive Evolution?

Ramiro Logares, Karin Rengefors, Anke Kremp, Kamran Shalchian-Tabrizi, Andrés Boltovskoy, Torstein Tengs, Aaron Shurtleff, Dag Klaveness

Journal:

Microbial Ecology

Year:

2007

Language:

english

File:

PDF, 544 KB

english, 2007

7

Diversification of unicellular eukaryotes: cryptomonad colonizations of marine and fresh waters inferred from revised 18S rRNA phylogeny

Kamran Shalchian-Tabrizi, Jon Bråte, Ramiro Logares, Dag Klaveness, Cédric Berney, Kjetill S. Jakobsen

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 9.97 MB

english, 2008

8

Verrucophora farcimen gen. et sp. nov. (Dictyochophyceae, Heterokonta)—a bloom-forming ichthyotoxic flagellate from the Skagerrak, Norway

Bente Edvardsen, Wenche Eikrem, Kamran Shalchian-Tabrizi, Ingvild Riisberg, Geir Johnsen, Lars Naustvoll, Jahn Throndsen

Journal:

Journal of Phycology

Year:

2007

Language:

english

File:

PDF, 1.19 MB

english, 2007

9

Combined Heat Shock Protein 90 and Ribosomal RNA Sequence Phylogeny Supports Multiple Replacements of Dinoflagellate Plastids

KAMRAN SHALCHIAN-TABRIZI, MARIANNE A. MINGE, TOM CAVALIER-SMITH, JOACHIM M. NEDREKLEPP, DAG KLAVENESS, KJETILL S. JAKOBSEN

Journal:

Journal of Eukaryotic Microbiology

Year:

2006

Language:

english

File:

PDF, 150 KB

english, 2006

10

Revisiting the Phylogenetic Position of Synchroma grande

VISHWANATH PATIL, JON BRÅTE, KAMRAN SHALCHIAN-TABRIZI, KJETILL S. JAKOBSEN

Journal:

Journal of Eukaryotic Microbiology

Year:

2009

Language:

english

File:

PDF, 240 KB

english, 2009

11

Marine–Freshwater Colonizations of Haptophytes Inferred from Phylogeny of Environmental 18S rDNA Sequences

KAMRAN SHALCHIAN-TABRIZI, KJETIL REIER-RØBERG, DAN KRISTOFER REE, DAG KLAVENESS, JON BRÅTE

Journal:

Journal of Eukaryotic Microbiology

Year:

2011

Language:

english

File:

PDF, 273 KB

english, 2011

12

Freshwater Perkinsea and marine-freshwater colonizations revealed by pyrosequencing and phylogeny of environmental rDNA

Bråte, Jon, Logares, Ramiro, Berney, Cédric, Ree, Dan Kristofer, Klaveness, Dag, Jakobsen, Kjetill S, Shalchian-Tabrizi, Kamran

Journal:

The ISME Journal

Year:

2010

Language:

english

File:

PDF, 708 KB

english, 2010

13

Collodictyon--An Ancient Lineage in the Tree of Eukaryotes

Zhao, S., Burki, F., Brate, J., Keeling, P. J., Klaveness, D., Shalchian-Tabrizi, K.

Journal:

Molecular Biology and Evolution

Year:

2012

Language:

english

File:

PDF, 3.61 MB

english, 2012

14

Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases

Suga, H., Dacre, M., de Mendoza, A., Shalchian-Tabrizi, K., Manning, G., Ruiz-Trillo, I.

Journal:

Science Signaling

Year:

2012

Language:

english

File:

PDF, 517 KB

english, 2012

15

The 18S and 28S rDNA identity and phylogeny of the common lotic chrysophyte Hydrurus foetidus

Klaveness, Dag, Bråte, Jon, Patil, Vishwanath, Shalchian-Tabrizi, Kamran, Kluge, Ragnhild, Gislerød, Hans Ragnar, Jakobsen, Kjetill S.

Journal:

European Journal of Phycology

Year:

2011

Language:

english

File:

PDF, 1.05 MB

english, 2011

16

Phylogenetic Relationships within the Opisthokonta Based on Phylogenomic Analyses of Conserved Single-Copy Protein Domains

Torruella, G., Derelle, R., Paps, J., Lang, B. F., Roger, A. J., Shalchian-Tabrizi, K., Ruiz-Trillo, I.

Journal:

Molecular Biology and Evolution

Year:

2012

Language:

english

File:

PDF, 538 KB

english, 2012

17

The brain–pituitary–gonad axis in male teleosts, with special emphasis on flatfish (Pleuronectiformes)

Finn-Arne Weltzien, Eva Andersson, Øivind Andersen, Kamran Shalchian-Tabrizi, Birgitta Norberg

Journal:

Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology

Year:

2004

Language:

english

File:

PDF, 1.68 MB

english, 2004

18

Accelerated nrDNA evolution and profound AT bias in the medicinal fungus Cordyceps sinensis

Øyvind Stensrud, Trond Schumacher, Kamran Shalchian-Tabrizi, Ingeborg Bjorvand Svegården, Håvard Kauserud

Journal:

Mycological Research

Year:

2007

Language:

english

File:

PDF, 252 KB

english, 2007

19

Analysis of Environmental 18S Ribosomal RNA Sequences reveals Unknown Diversity of the Cosmopolitan Phylum Telonemia

Kamran Shalchian-Tabrizi, Håvard Kauserud, Ramon Massana, Dag Klaveness, Kjetill S. Jakobsen

Journal:

Year:

2007

Language:

english

File:

PDF, 445 KB

english, 2007

20

Seven Gene Phylogeny of Heterokonts

Ingvild Riisberg, Russell J.S. Orr, Ragnhild Kluge, Kamran Shalchian-Tabrizi, Holly A. Bowers, Vishwanath Patil, Bente Edvardsen, Kjetill S. Jakobsen

Journal:

Year:

2009

Language:

english

File:

PDF, 1020 KB

english, 2009

21

Radiolaria Associated with Large Diversity of Marine Alveolates

Jon Bråte, Anders K. Krabberød, Jane K. Dolven, Randi F. Ose, Tom Kristensen, Kjell R. Bjørklund, Kamran Shalchian-Tabrizi

Journal:

Year:

2012

Language:

english

File:

PDF, 434 KB

english, 2012

22

Identification and comparative analysis of the RpL14 gene from Takifugu rubripes

ESPEN ENERLY, HASSAN AHMADI, KAMRAN SHALCHIAN-TABRIZI, ANDREW LAMBERTSSON

Journal:

Year:

2003

Language:

english

File:

PDF, 478 KB

english, 2003

23

AIR: A batch-oriented web program package for construction of supermatrices ready for phylogenomic analyses

Surendra Kumar, Åsmund Skjæveland, Russell JS Orr, Pål Enger, Torgeir Ruden, Bjørn-Helge Mevik, Fabien Burki, Andreas Botnen, Kamran Shalchian-Tabrizi

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.86 MB

english, 2009

24

A phylogenetic mosaic plastid proteome and unusual plastid-targeting signals in the green-colored dinoflagellateLepidodinium chlorophorum

Marianne A Minge, Kamran Shalchian-Tabrizi, Ole K Tørresen, Kiyotaka Takishita, Ian Probert, Yuji Inagaki, Dag Klaveness, Kjetill S Jakobsen

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 1.25 MB

english, 2010

25

Telonemia-specific environmental 18S rDNA PCR reveals unknown diversity and multiple marine-freshwater colonizations

Jon Bråte, Dag Klaveness, Tellef Rygh, Kjetill S Jakobsen, Kamran Shalchian-Tabrizi

Journal:

BMC Microbiology

Year:

2010

Language:

english

File:

PDF, 746 KB

english, 2010

26

Infrequent marine–freshwater transitions in the microbial world

Ramiro Logares, Jon Bråte, Stefan Bertilsson, Jessica L. Clasen, Kamran Shalchian-Tabrizi, Karin Rengefors

Journal:

Trends in Microbiology

Year:

2009

Language:

english

File:

PDF, 292 KB

english, 2009

27

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes

Burki, F., Shalchian-Tabrizi, K., Pawlowski, J.

Journal:

Biology Letters

Year:

2008

Language:

english

File:

PDF, 118 KB

english, 2008

28

Telonemia, a new protist phylum with affinity to chromist lineages

Shalchian-Tabrizi, K, Eikrem, W, Klaveness, D, Vaulot, D, Minge, M.A, Le Gall, F, Romari, K, Throndsen, J, Botnen, A, Massana, R, Thomsen, H.A, Jakobsen, K.S

Journal:

Proceedings Biological Sciences

Year:

2006

Language:

english

File:

PDF, 373 KB

english, 2006

29

Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates

Espelund, Mari, Minge, Marianne A., Gabrielsen, Tove M., Nederbragt, Alexander J., Shalchian-Tabrizi, Kamran, Otis, Christian, Turmel, Monique, Lemieux, Claude, Jakobsen, Kjetill S., Moustafa, Ahmed

Journal:

Year:

2012

Language:

english

File:

PDF, 3.36 MB

english, 2012

30

Structural analysis of a non-ribosomal halogenated cyclic peptide and its putative operon from Microcystis: implications for evolution of cyanopeptolins

Tooming-Klunderud, A., Rohrlack, T., Shalchian-Tabrizi, K., Kristensen, T., Jakobsen, K. S.

Journal:

Microbiology (Society for General Microbiology)

Year:

2007

Language:

english

File:

PDF, 504 KB

english, 2007

31

Sulcozoa revealed as a paraphyletic group in mitochondrial phylogenomics

Zhao, Sen, Shalchian-Tabrizi, Kamran, Klaveness, Dag

Journal:

Molecular Phylogenetics and Evolution

Year:

2013

Language:

english

File:

PDF, 946 KB

english, 2013

32

BLAST output visualization in the new sequencing era

Neumann, R. S., Kumar, S., Shalchian-Tabrizi, K.

Journal:

Briefings in Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.42 MB

english, 2014

33

Phenotypically Different Microalgal Morphospecies with Identical Ribosomal DNA: A Case of Rapid Adaptive Evolution?

Ramiro Logares, Karin Rengefors, Anke Kremp, Kamran Shalchian-Tabrizi, Andrés Boltovskoy, Torstein Tengs, Aaron Shurtleff and Dag Klaveness

Journal:

Microbial Ecology

Year:

2007

Language:

english

File:

PDF, 2.46 MB

english, 2007

34

Telonemia, a New Protist Phylum with Affinity to Chromist Lineages

K. Shalchian-Tabrizi, W. Eikrem, D. Klaveness, D. Vaulot, M. A. Minge, F. Le Gall, K. Romari, J. Throndsen, A. Botnen, R. Massana, H. A. Thomsen and K. S. Jakobsen

Journal:

Proceedings Biological Sciences

Year:

2006

Language:

english

File:

PDF, 2.72 MB

english, 2006

35

Evolutionary position of breviate amoebae and the primary eukaryote divergence

A. Minge, M., Silberman, J. D, Orr, R. J.S, Cavalier-Smith, T., Shalchian-Tabrizi, K., Burki, F., Skjaeveland, A., Jakobsen, K. S

Journal:

Proceedings Biological Sciences

Year:

2009

Language:

english

File:

PDF, 299 KB

english, 2009

36

The catalytic domain CysPc of the DEK1 calpain is functionally conserved in land plants

Liang, Zhe, Demko, Viktor, Wilson, Robert C., Johnson, Kenneth A., Ahmad, Rafi, Perroud, Pierre-François, Quatrano, Ralph, Zhao, Sen, Shalchian-Tabrizi, Kamran, Otegui, Marisa S., Olsen, Odd-Arne, Joh

Journal:

The Plant Journal

Year:

2013

Language:

english

File:

PDF, 1.26 MB

english, 2013

37

BLASTGrabber: a bioinformatic tool for visualization, analysis and sequence selection of massive BLAST data

Neumann, Ralf, Kumar, Surendra, Haverkamp, Thomas Hendricus, Shalchian-Tabrizi, Kamran

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 2.39 MB

english, 2014

38

Infrequent Transitions between Saline and Fresh Waters in One of the Most Abundant Microbial Lineages (SAR11)

Logares, R., Brate, J., Heinrich, F., Shalchian-Tabrizi, K., Bertilsson, S.

Journal:

Molecular Biology and Evolution

Year:

2010

Language:

english

File:

PDF, 612 KB

english, 2010

39

Multilocus sequencing reveals multiple geographically structured lineages of Coniophora arida and C. olivacea (Boletales) in North America

Kauserud, H., Shalchian-Tabrizi, K., Decock, C.

Journal:

Year:

2007

Language:

english

File:

PDF, 346 KB

english, 2007

40

Galerina Earle: A polyphyletic genus in the consortium of dark-spored agarics

Gulden, G., Stensrud, O., Shalchian-Tabrizi, K., Kauserud, H.

Journal:

Year:

2005

Language:

english

File:

PDF, 756 KB

english, 2005

41

Heterotachy Processes in Rhodophyte-Derived Secondhand Plastid Genes: Implications for Addressing the Origin and Evolution of Dinoflagellate Plastids

Shalchian-Tabrizi, K.

Journal:

Molecular Biology and Evolution

Year:

2006

Language:

english

File:

PDF, 400 KB

english, 2006

42

Multilocus Sequencing Reveals Multiple Geographically Structured Lineages of Coniophora arida and C. Olivacea (Boletales) in North America

Håvard Kauserud, Kamran Shalchian-Tabrizi and Cony Decock

Journal:

Year:

2007

Language:

english

File:

PDF, 1.09 MB

english, 2007

43

Galerina Earle: A Polyphyletic Genus in the Consortium of Dark-Spored Agarics

Gro Gulden, Øyvind Stensrud, Kamran Shalchian-Tabrizi and Håvard Kauserud

Journal:

Year:

2005

Language:

english

File:

PDF, 2.67 MB

english, 2005

44

Phylogenetic Analyses Indicate that the 19'Hexanoyloxy-fucoxanthin-Containing Dinoflagellates Have Tertiary Plastids of Haptophyte Origin

Tengs, T., Dahlberg, O. J., Shalchian-Tabrizi, K., Klaveness, D., Rudi, K., Delwiche, C. F., Jakobsen, K. S.

Journal:

Molecular Biology and Evolution

Year:

2000

Language:

english

File:

PDF, 533 KB

english, 2000

45

Evolutionary Position of Breviate Amoebae and the Primary Eukaryote Divergence

Marianne A. Minge, Jeffrey D. Silberman, Russell J. S. Orr, Thomas Cavalier-Smith, Kamran Shalchian-Tabrizi, Fabien Burki, Åsmund Skjæveland and Kjetill S. Jakobsen

Journal:

Proceedings Biological Sciences

Year:

2009

Language:

english

File:

PDF, 1.76 MB

english, 2009

46

Galerina Earle: A polyphyletic genus in the consortium of dark-spored agarics

Gulden, Gro, Stensrud, Øyvind, Shalchian-Tabrizi, Kamran, Kauserud, Håvard

Journal:

Year:

2005

Language:

english

File:

PDF, 944 KB

english, 2005

47

Regulatory RNA at the root of animals: dynamic expression of developmental lincRNAs in the calcisponge Sycon ciliatum

Bråte, Jon, Adamski, Marcin, Neumann, Ralf S., Shalchian-Tabrizi, Kamran, Adamska, Maja

Journal:

Proceedings Biological Sciences

Year:

2015

Language:

english

File:

PDF, 1019 KB

english, 2015

48

X-Cells Are Globally Distributed, Genetically Divergent Fish Parasites Related to Perkinsids and Dinoflagellates

Freeman, Mark A., Fuss, Janina, Kristmundsson, Árni, Bjorbækmo, Marit F.M., Mangot, Jean-François, del Campo, Javier, Keeling, Patrick J., Shalchian-Tabrizi, Kamran, Bass, David

Journal:

Current Biology

Year:

2017

Language:

english

File:

PDF, 3.21 MB

english, 2017

49

Single Cell Transcriptomics, Mega-Phylogeny, and the Genetic Basis of Morphological Innovations in Rhizaria

Krabberød, Anders K., Orr, Russell J.S., Bråte, Jon, Kristensen, Tom, Bjørklund, Kjell R., Shalchian-Tabrizi, Kamran

Journal:

Molecular Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 5.30 MB

english, 2017

50

Multilocus sequencing reveals multiple geographically structured lineages of Coniophora arida and C. olivacea (Boletales) in North America

Kauserud, Håvard, Shalchian-Tabrizi, Kamran, Decock, Cony

Journal:

Year:

2007

Language:

english

File:

PDF, 524 KB

english, 2007

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